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SRX18922066: GSM6915195: dEFP_60; Bacillus subtilis subsp. subtilis str. 168; OTHER
1 ILLUMINA (Illumina HiSeq 2500) run: 44.1M spots, 2.2G bases, 1.4Gb downloads

External Id: GSM6915195_r1
Submitted by: Molecular Biology and Genetics, Johns Hopkins University School of Medicine
Study: Elongation Factor P is important for sporulation initiation
show Abstracthide Abstract
The universally conserved protein Elongation Factor P facilitates translation at amino acids that form peptide bonds with low efficiency, particularly poly-proline tracts. Despite its wide conservation, it is not essential in most bacteria and its physiological role remains unclear. Here, we show that EF-P affects the process of sporulation initiation in the bacterium Bacillus subtilis. We observe that lack of EF-P delays expression of sporulation-specific genes. Using ribosome profiling, we observe that expression of spo0A, encoding a transcription factor that functions as the master regulator of sporulation, is lower in a ?efp strain as compared to the wildtype. Ectopic expression of Spo0A rescues the sporulation initiation phenotype, indicating that reduced spo0A expression explains the sporulation defect in ?efp cells. Since Spo0A is the earliest sporulation transcription factor, these data suggest that sporulation initiation can be delayed when protein synthesis is impaired. Overall design: Ribosome profiling of wild-type B. subtilis and a strain lacking EFP 15 and 60 minutes after induction of sporulation
Sample: dEFP_60
SAMN32573669 • SRS16348161 • All experiments • All runs
Library:
Name: GSM6915195
Instrument: Illumina HiSeq 2500
Strategy: OTHER
Source: TRANSCRIPTOMIC
Selection: other
Layout: SINGLE
Construction protocol: 50 mL of culture was directly flash-frozen in liquid nitrogen and cryogenically pulverized in a Spex 6870 freezer mill using 10 cycles of 1 min at 10 Hz with 1 min cooling. The lysis buffer contained 150 mM MgCl2 to arrest translation. Ribosomes were pelleted over a sucrose cushion prior to digestion of mRNA with MNase. After digestion, 70S monosomes were purified over a sucrose gradient. Ribosome footprints and total RNA fragments 15-45 nt in length were PAGE purified, ligated to a linker using RNA ligase T2, converted to DNA using RT, circularized, and PCR amplified.
Runs: 1 run, 44.1M spots, 2.2G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
SRR2296561844,088,0702.2G1.4Gb2023-01-04

ID:
26052777

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